Skills
With a strong background in cancer research and bioinformatics, I specialize in analyzing complex biological datasets to uncover insights into breast, lung, and colorectal cancers. Below are my key areas of expertise, ranging from well-established skills to exploratory techniques in genomics, transcriptomics, and computational biology.
Areas of Expertise
Significant Experience
- Transcriptomics (Bulk RNA-seq): RNA-seq alignment (genome-based or pseudo-alignment), transcript or gene counting, and analysis
- Differential Gene Expression Analysis
- Pathway Enrichment Analysis
- Immune Deconvolution
- Transposable Elements (with a focus on Endogenous Retroviruses)
- Biostatistics and Modeling (Machine Learning)
Limited/Exploratory Experience
- Transcriptomics (Single-cell RNA-seq): Alignment and analysis (Seurat)
- Metabam and IGV Visualization
- Genome Browser
- ATAQ-seq
- Bisulfite-seq
- Proteomics (PepQuery)
- DNA-seq: Variant calling, copy number variation, genomic signatures
- Fusion Transcripts
- Digital Pathology (QuPath)